GgaEX0028342 @ galGal3
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17898543-17913039:-
Coord C1 exon
chr2:17912936-17913039
Coord A exon
chr2:17910377-17910470
Coord C2 exon
chr2:17898543-17898638
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGGTTTGTTTCTAGTGC
3' ss Score
6.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTTGCTATATCTGTGATGAACAAGGCAGAGAAAGTAAAGCAGCCACTGGTGCATGCATGACATGTAATAAACACGGATGTCGACAAGCTTTTCATGTAACATG
Seq A exon
TGCACAGTTTGCAGGACTTCTTTGTGAAGAAGAAGGCAATGGTGCAGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq C2 exon
AAATATAAAGAGAAAGATAAACACAAGCAAAAATATAAGAAGCAGTCGGAGTCCTCACCGTCCTTGGTTCCATCTCTTACTGTAACTACAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-5/21=4-7
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(35.4=100),PF099474=DUF2180=FE(79.1=100)
A:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGATGAACAAGGCAGAGA
R:
AGATGGAACCAAGGACGGTGA
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]