RnoEX0054851 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84888802-84922765:+
Coord C1 exon
chr17:84888802-84888911
Coord A exon
chr17:84900262-84900365
Coord C2 exon
chr17:84922670-84922765
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTCGTCTCTTTCTCCCAAGACT
3' ss Score
7.32
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTTGGGCTCATGTGGTTTGTGCCCTCTATATCCCAGAGGTACAATTTGCCAATGTTTCTACAATGGAGCCAATCGTTTTACAGTCTGTCCCACATGATCGTTATAATAAG
Seq A exon
ACTTGCTACATATGTGATGAGCAAGGACGAGAGAGCAAAGCGGCCACTGGCGCCTGCATGACATGCAATAAACATGGATGTCGACAGGCCTTCCATGTAACATG
Seq C2 exon
AAATATAAAGAAAAGGACAAACACAAACCAAAACACAAGAAGCAACCCGAGCCATCACCCGCCTTGGTTCCTTCTTTGACTGTTACTACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-6/13=5-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
A:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGCTCATGTGGTTTGTG
R:
AACAGTCAAAGAAGGAACCAAGGC
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]