RnoEX0054850 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84881616-84900365:+
Coord C1 exon
chr17:84881616-84881670
Coord A exon
chr17:84888802-84888911
Coord C2 exon
chr17:84900262-84900365
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATCTATTTTAGGTT
3' ss Score
11.72
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGATGTGAGCTGTGTCCCCATAAAGATGGAGCTTTAAAAAGAACAGATAATGGGG
Seq A exon
GTTGGGCTCATGTGGTTTGTGCCCTCTATATCCCAGAGGTACAATTTGCCAATGTTTCTACAATGGAGCCAATCGTTTTACAGTCTGTCCCACATGATCGTTATAATAAG
Seq C2 exon
ACTTGCTACATATGTGATGAGCAAGGACGAGAGAGCAAAGCGGCCACTGGCGCCTGCATGACATGCAATAAACATGGATGTCGACAGGCCTTCCATGTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-5/13=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
C2:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
Main Skipping Isoform:
ENSRNOT00000034157fB8802
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGAGCTGTGTCCCCAT
R:
TACATGGAAGGCCTGTCGACA
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]