Special

GgaEX0011303 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr2:17912936-17928741:-
Coord C1 exon
chr2:17928687-17928741
Coord A exon
chr2:17917745-17917854
Coord C2 exon
chr2:17912936-17913039
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACAATTATAACTTTTTGTAGGTT
3' ss Score
6.48
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AGATGTGAATTATGCCCTCATAAGGATGGTGCTTTAAAGAGAACAGATAATGGGG
Seq A exon
GTTGGGCTCATGTGGTTTGTGCTCTGTACATTCCCGAGGTGCAGTTTGCGAATGTCGCTACAATGGAACCTATTGTGTTGCAGTCCGTTCCTCATGATCGTTATAATAAG
Seq C2 exon
ACTTGCTATATCTGTGATGAACAAGGCAGAGAAAGTAAAGCAGCCACTGGTGCATGCATGACATGTAATAAACACGGATGTCGACAAGCTTTTCATGTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-3/21=2-4
Average complexity
S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
PF138321=zf-HC5HC2H_2=FE(37.5=100),PF099474=DUF2180=PU(0.1=0.0)
C2:
PF138321=zf-HC5HC2H_2=FE(35.4=100),PF099474=DUF2180=FE(79.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATTATGCCCTCATAAGGATGG
R:
TGTTACATGAAAAGCTTGTCGACA
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]