Special

GgaEX0011303 @ galGal4

Exon Skipping

Gene
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17881268-17897073:-
Coord C1 exon
chr2:17897019-17897073
Coord A exon
chr2:17886077-17886186
Coord C2 exon
chr2:17881268-17881371
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACAATTATAACTTTTTGTAGGTT
3' ss Score
6.48
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AGATGTGAATTATGCCCTCATAAGGATGGTGCTTTAAAGAGAACAGATAATGGGG
Seq A exon
GTTGGGCTCATGTGGTTTGTGCTCTGTACATTCCCGAGGTGCAGTTTGCGAATGTCGCTACAATGGAACCTATTGTGTTGCAGTCCGTTCCTCATGATCGTTATAATAAG
Seq C2 exon
ACTTGCTATATCTGTGATGAACAAGGCAGAGAAAGTAAAGCAGCCACTGGTGCATGCATGACATGTAATAAACACGGATGTCGACAAGCTTTTCATGTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX2-4/14=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
C2:
PF138321=zf-HC5HC2H_2=FE(28.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATTATGCCCTCATAAGGATGG
R:
TGTTACATGAAAAGCTTGTCGACA
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]