BtaEX0022530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23080003-23117190:+
Coord C1 exon
chr13:23080003-23080057
Coord A exon
chr13:23104909-23105018
Coord C2 exon
chr13:23117087-23117190
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTACTTATTTTTAGGTT
3' ss Score
10.26
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGATGTGAACTGTGTCCTCATAAGGATGGAGCTTTAAAAAGAACAGATAATGGCG
Seq A exon
GTTGGGCTCATGTGGTTTGTGCCCTGTATATACCAGAGGTACAGTTTGCCAATGTTTCTACAATGGAACCAATTGTTTTACAGTCTGTTCCACATGATCGTTATAATAAG
Seq C2 exon
ACTTGCTATATTTGTGATGAACAAGGAAGAGAAAGCAAAGCAGCCACTGGTGCTTGCATGACATGTAATAAACATGGATGTCGACAAGCTTTCCACGTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074_MULTIEX1-2/4=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
C2:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACTGTGTCCTCATAAGG
R:
TGTCACGTGGAAAGCTTGTCG
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development