RnoEX0054849 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84881616-84888911:+
Coord C1 exon
chr17:84881616-84881670
Coord A exon
chr17:84884962-84885062
Coord C2 exon
chr17:84888802-84888911
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCACCTCATTTTTAATACAGGGT
3' ss Score
6.61
5' ss Seq
ACCGTATGA
5' ss Score
2.71
Exon sequences
Seq C1 exon
AGATGTGAGCTGTGTCCCCATAAAGATGGAGCTTTAAAAAGAACAGATAATGGGG
Seq A exon
GGTATCATGGAGCCTGGGATTCATTGAGCTGCTAGACTGACTGGTTAGCTGACCTCTCTCCTGCCTGCTTTCCAGCAGAGTGCAGCCGTGTGTTCCACACC
Seq C2 exon
GTTGGGCTCATGTGGTTTGTGCCCTCTATATCCCAGAGGTACAATTTGCCAATGTTTCTACAATGGAGCCAATCGTTTTACAGTCTGTCCCACATGATCGTTATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-4/13=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
PF138321=zf-HC5HC2H_2=PD(33.3=83.3)
C2:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
Main Inclusion Isoform:
ENSRNOT00000034157fB8802
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGAGCTGTGTCCCCAT
R:
ATTATAACGATCATGTGGGACAGACT
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]