DreEX0046784 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17003747-17030197:+
Coord C1 exon
chr24:17003747-17003826
Coord A exon
chr24:17021132-17021235
Coord C2 exon
chr24:17030102-17030197
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTGGTGCCTTTTTTTTCAAGACA
3' ss Score
5.38
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCTGCTATGGAATTGTCCAGGTCCCCACAGGCCCTTGGTTCTGCAGGAAATGTGAATCACAGGAACGTGCTGCCAGGGTG
Seq A exon
ACATGCTACATCTGTGAGGAACAGGGTCGTGAGAGCAAAGCTGCTACTGGAGCCTGCATGACATGCAATAAACATGGCTGCAGACAGGCCTTTCATGTCACATG
Seq C2 exon
AAGCATAAAGAAAGAGATCGGCATAAACCAAAGCACAAAAAGCCTTTGGAACTGTCGCCTTCCCTGGTGCCAGCGCTGATGGTGACACCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_MULTIEX1-4/7=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.969
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
PF138321=zf-HC5HC2H_2=FE(28.8=100),PF0465211=DUF605=PU(3.2=17.1)
C2:
PF0465211=DUF605=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGTCCAGGTCCCCACAG
R:
TTTCAGGTGTCACCATCAGCG
Band lengths:
165-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]