GgaEX0028343 @ galGal3
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17831476-17917854:-
Coord C1 exon
chr2:17917745-17917854
Coord A exon
chr2:17912936-17913039
Coord C2 exon
chr2:17831476-17833282
Length
104 bp
Sequences
Splice sites
3' ss Seq
AAGTATTTTCTCTTTGACAGACT
3' ss Score
6.42
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTGGGCTCATGTGGTTTGTGCTCTGTACATTCCCGAGGTGCAGTTTGCGAATGTCGCTACAATGGAACCTATTGTGTTGCAGTCCGTTCCTCATGATCGTTATAATAAG
Seq A exon
ACTTGCTATATCTGTGATGAACAAGGCAGAGAAAGTAAAGCAGCCACTGGTGCATGCATGACATGTAATAAACACGGATGTCGACAAGCTTTTCATGTAACATG
Seq C2 exon
ACACACACACACACACACACTCTCATTCAGAAATCTGACTCTATTCTGAACTTCTATTCCTTTAAATTCCTGTTGTTATGTAGTGGGAGTTTTTCCTGAGTAAGAATTACAGTACGGGATCCAAAGTTAATCCATTTTGGTGTAGGTTTTAGAGTGCTGAGGTTTTTAAAGGAACTGGTTTGGTTCCAGAAACAAAGTTTTCTTACCAGATGAGAAGGCCGCACTGGAAGAATTAGGTGTAGTGTTTGGCCTGAACCAAGTGCCTGTTGCTACCTCCGCTTCGTTGGAATGGCTGCCAACAGCTGATGATGCACTAGACGTGTCCTTGTGAGCAGCAGGAAGGGTCGGTGTTGCACCAGCAGCCTTGTCGTTCTGCCTTTACTCCAAGTGTTTCTACCACTGTAGAGAGCTCAGGCAGATCGTTACCTGGGTCGCTTTTCGCTAATAAACTACCAAAAAGGGAGCGAGGATTTCCCACTGGAGTCTATCAGTGGTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-4/21=3-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(37.5=100),PF099474=DUF2180=PU(0.1=0.0)
A:
PF138321=zf-HC5HC2H_2=FE(35.4=100),PF099474=DUF2180=FE(79.1=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTGCAGTCCGTTCCTCAT
R:
GCGGCCTTCTCATCTGGTAAG
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]