DreEX0048367 @ danRer10
Exon Skipping
Gene
ENSDARG00000073732 | myh14
Description
myosin, heavy chain 14, non-muscle [Source:ZFIN;Acc:ZDB-GENE-100921-1]
Coordinates
chr16:16991976-16994237:+
Coord C1 exon
chr16:16991976-16992047
Coord A exon
chr16:16992149-16992163
Coord C2 exon
chr16:16994032-16994237
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTCTTTGCATCAGGTT
3' ss Score
9.78
5' ss Seq
TGTGTGGGT
5' ss Score
-1.86
Exon sequences
Seq C1 exon
ATATTCAAACTCTTCCTCGCGTGTACTTTTTTGACTCTTATGCCACACTGCAAACGAATGGCTGTGACAGCA
Seq A exon
GTTGTGATGTGATGT
Seq C2 exon
TGGAGAGGATTGTAGGTCTGGATCAGGTGTCCTCAGGTGAGAACAGTGGACCGGTGAGTTTTGGGGCTGCTGGACTCAAGACGAAGAAGGGCATGTTCCGCACAGTGGGCCAACTCTACAAGGAGTCCCTCACTAAACTGATGGCCACCCTCCGCAACACCAATCCTAACTTCCTGCGCTGCATCATTCCCAACCATGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073732-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=FE(0.7=100)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Inclusion Isoform:
ENSDART00000047409fB4034
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAAACGAATGGCTGTG
R:
CTTCGTCTTGAGTCCAGCAGC
Band lengths:
113-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]