DreEX0048368 @ danRer10
Exon Skipping
Gene
ENSDARG00000073732 | myh14
Description
myosin, heavy chain 14, non-muscle [Source:ZFIN;Acc:ZDB-GENE-100921-1]
Coordinates
chr16:16990708-16994237:+
Coord C1 exon
chr16:16990708-16990822
Coord A exon
chr16:16991976-16992047
Coord C2 exon
chr16:16994032-16994237
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTCTTCTCTCAGATA
3' ss Score
11.03
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
GTGGATTATAAAGCAAAAGAGTGGCTGGTGAAGAACATGGATCCCTTGAATGATAATGTTGCATCTCTCCTGCATCAGTCATCTGACCCCTTCATCTCTGAGCTCTGGAGGGAGG
Seq A exon
ATATTCAAACTCTTCCTCGCGTGTACTTTTTTGACTCTTATGCCACACTGCAAACGAATGGCTGTGACAGCA
Seq C2 exon
TGGAGAGGATTGTAGGTCTGGATCAGGTGTCCTCAGGTGAGAACAGTGGACCGGTGAGTTTTGGGGCTGCTGGACTCAAGACGAAGAAGGGCATGTTCCGCACAGTGGGCCAACTCTACAAGGAGTCCCTCACTAAACTGATGGCCACCCTCCGCAACACCAATCCTAACTTCCTGCGCTGCATCATTCCCAACCATGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073732_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTGGTGAAGAACATGG
R:
CTTCGTCTTGAGTCCAGCAGC
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]