DreEX0048577 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8155120-8185507:+
Coord C1 exon
chr9:8155120-8155205
Coord A exon
chr9:8167755-8167844
Coord C2 exon
chr9:8182285-8185507
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGTCTCTCTTCCAGAGA
3' ss Score
11.59
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAACTCTGGAAGACGAGGGACACCCAAAGCCTATGGCATCCAGCTCCTCAACGTTACACAGGCACATGGACAGCCACCACACTCAG
Seq A exon
AGAAGTCATCTCAACTTCTCGCCCTTCGGTGCAGGGGCAGCGCTGTAGGCTCGGGGGCTGAATGAGCCCTCAGGCCTGTGTAGGGATGGG
Seq C2 exon
GTGCCCCAGAGGTCACGTGCGTGTGGGGAACAGCGGGCCACTCTGCAGGAATTACTGCGCTGGCGGAGAAGTGTTTGTGATGGCCGACCAGACTGGCAGAACGCTTGGCTCCACACAAACACCTCACCCACCCTAACAGTTAAGACCAAGAGCCCCAGAAAGAAAGCGTCACCCTAGAGACTGTGGTCTTGCTGAGTTCCCCCTCAGTTAAACCCCACTCCTTAGGCCTGATGATGCCCTTATGTTTTACCCCTTGCACAGGGGTAGCCTCTACAGTCAAACTCAGAACTCATGAGAGGATGGCGTTCCATCCAAAGTTGTTCTTCTTCCTCTTCATTTTTGAAATGGAAATTTGCTTGACGTCATCTCTACAACTAATCGCCAAATAACATGGAGACCCCCAAGGACTACAGAGCCCTATCCTGAATAGTCATTGCCAGGCAGACGAAAGGGAATATGGCTTCTATTAATCTCCTTTTACAGTGTCCTAAATGTAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.933 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACACAGGCACATGGACAGC
R:
TAGGGTGGGTGAGGTGTTTGT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]