GgaEX1037983 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137718198-137737925:+
Coord C1 exon
chr1:137718198-137718289
Coord A exon
chr1:137720585-137720610
Coord C2 exon
chr1:137733062-137737925
Length
26 bp
Sequences
Splice sites
3' ss Seq
TCCCCATCATTTTCTTCCAGAGT
3' ss Score
8.23
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTGTACCAGAGGAAAATGAATATTCAAGACTGTCAGCCAGCACTACAGCAGGTTCATCGATTCAAAGACACAGGGAGAGCCACACTACTCAG
Seq A exon
AGTCAAAGAAACCACCAAAGTGGAAG
Seq C2 exon
GTTATTCATCAGCTTAGACTTTCTGAGAATGAGAGTGTGGCTCTGCAAGAGCTTCTAGATTGGAGGAGAAAGCTGTGTGAGGAGAGAGAAGACTGGCAACAAATCTTGCACAACACTGAGCAAAGAATCACAGCCCCTCCTCCACCCCCTTGTAAAAAACCAACACTGCTGAAGAAGGTGGAAGATGCCTCCTGCAACAGACTGTCTTCAGGCATCTGGGATACCACCATGTGATCGGAATGTGTGTGTTTGCAGACAGTTAGGAGTGATACCATCTCATGCCTTCAGTCTGCACAATCAGCAAGTTTCCTTCCCTCCACAGAATGTGCAGGGTTTTTTTTTACAAGCAATCCTTCAAGAGCACAGGATGGACAAGCTATTTAGATATGTCATGTGTGCGTGTATTTGTATGTTTGTCCTTTTCATACATATATATACACATATGCATATATCTGTGCATCTATATGTACGTGTGTGTGTATATATATATAAGGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000027192fB9693
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGACACAGGGAGAGCCA
R:
CCTCACACAGCTTTCTCCTCC
Band lengths:
113-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]