DreEX0048696 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3799038-3804869:-
Coord C1 exon
chr9:3804790-3804869
Coord A exon
chr9:3804522-3804542
Coord C2 exon
chr9:3799038-3799115
Length
21 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCTCTCTCCTCTCAGTCT
3' ss Score
10.87
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAATCTGGCCACATCCAGAGCAAGAGTGACAGCAGCCTCCAGATCTCTGCCTCCGCAACTCAACAGCGGAAGAAATAAG
Seq A exon
TCTCCTAAATACCTGTTAAAG
Seq C2 exon
GTGGACACCATGGAAATGATGCGTCACCCTGAAGAAACCACTAACATGAGGAGACAGACAGTGGCGTCTTATTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.000 C2=0.467
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(0.8=100)
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
ENSDART00000010378fB4062
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCAAGAGTGACAGCAG
R:
GGTTTCTTCAGGGTGACGCAT
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]