DreEX0048759 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3128684-3132264:+
Coord C1 exon
chr18:3128684-3128790
Coord A exon
chr18:3129962-3130015
Coord C2 exon
chr18:3132127-3132264
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTAAAATGTGTTTTGTCAGTTT
3' ss Score
5.69
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTTTCTGGAGAAGAATCGAGACACTCTGCATGGTGACATCATTCAGCTCGTTCACTCCTCCAAAAACAAGTTCATCAAGCAGATCTTTCAGGCGGATGTCGCTATG
Seq A exon
TTTTTATGTGGTTATTGGTCTGACAGTCTTGGCAAAGCTGGTTCACTTCATAAG
Seq C2 exon
GGAGCAGAGACCCGCAAGCGTTCTCCGACTCTGAGCAGTCAGTTCAAGCGTTCTCTGGAGCTGTTAATGCGCACACTGAGCGTCTGCCAGCCGTTCTTCGTCCGCTGCATCAAACCCAATGAATACAAGAAACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.011
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
ENSDART00000158508fB4070
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACACTCTGCATGGTGAC
R:
CTGACTGCTCAGAGTCGGAGA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]