Special

MmuEX1018011 @ mm10

Exon Skipping

Gene
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98085384-98091128:-
Coord C1 exon
chr7:98091022-98091128
Coord A exon
chr7:98090360-98090413
Coord C2 exon
chr7:98085384-98085521
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCTGTGGTTCCCCTTATAGTTT
3' ss Score
9.16
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GCTTCCTGGAGAAGAACCGAGACACCCTGCATGGGGACATCATCCAGCTGGTCCACTCTTCCCGGAACAAGTTCATAAAGCAGATTTTCCAAGCTGACGTTGCCATG
Seq A exon
TTTCTCTGTGGTTATTCATCCGGCACTGTCGGCCAGGCAGCGGCTTCCTCGAAG
Seq C2 exon
GGTGCCGAGACCAGGAAGCGCTCGCCTACACTCAGCAGCCAGTTCAAGCGGTCTCTGGAGCTGCTGATGCGCACACTGGGCGCCTGCCAGCCCTTCTTTGTGCGTTGTATCAAACCCAATGAGTTCAAGAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.222 C2=0.033
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)


Main Inclusion Isoform:
ENSMUST00000107122fB13279


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAACCGAGACACCCT
R:
CTTGAACTGGCTGCTGAGTGT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types