DreEX0049997 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23069359-23070264:-
Coord C1 exon
chr9:23070157-23070264
Coord A exon
chr9:23069845-23069949
Coord C2 exon
chr9:23069359-23069463
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAAACGTATTGGTAACCCAGGTG
3' ss Score
1.58
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AACAAATACAGGGAGGAATATGAAAAATCAAAGGGGCAGCCCTACCTCATTTCGGCTGACACACCTGAGATGATTCGCATCAAAAAGGCCCAGGAGCAGCTAAGTGAG
Seq A exon
GTGAAATACCGTATGGAGGGACTGAAGGCCAAAACCACCAGTCTGTATGATGGTGAGGCTCGTGAAGTTGCCCATGTCAAGCGCGTCTCGGACCTCATCAGCAAA
Seq C2 exon
GTTCTGTACAGGCAGAAATGGGATGAGACTAAGGATAAGTACCTGCTCCCTCCTGACGCCCCTGAGCTTGTTCTTGCTGTGAAGAATGCAGCAAATTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.199 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATACAGGGAGGAATATGAAAAA
R:
TGCTGTAATTTGCTGCATTCTTCA
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]