RnoEX6016771 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37845743-37847429:-
Coord C1 exon
chr3:37847322-37847429
Coord A exon
chr3:37846776-37846880
Coord C2 exon
chr3:37845743-37845847
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGCGCGTGTCGTTTCTGCAGGTT
3' ss Score
9.25
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AATAAATACAAAGAGAACTACGAGAAAGCAAAGGGACAGCCATACGCCATCACAAGTGATACTCCAGAACTTCGCAGAATCAAGAAAGTCCAGGATCAACTCAGTGAG
Seq A exon
GTTAAGTATCGAATGGATGGAGACGTTGCTAAAACTATCTGTCATGTGGACGAAAAAGCCAAAGATATTGAACATGCTAAGAAAGTGTCGCAGCAAGTCAGCAAG
Seq C2 exon
GTTTTATACAAGCAGAACTGGGAAGACACCAAGGATAAGTACCTGCTTCCCCCTGATGCCCCTGAACTTGTCCAAGCCATCAAGAACACAGCCATGTTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.029 C2=0.029
Domain overlap (PFAM):
C1:
PF093165=Cmyb_C=FE(21.9=100),PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF093165=Cmyb_C=FE(21.2=100),PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
C2:
PF093165=Cmyb_C=PD(15.6=71.4),PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACAAAGAGAACTACGAGAAAGCA
R:
AACATGGCTGTGTTCTTGATGG
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]