HsaEX6015911 @ hg19
Exon Skipping
Gene
ENSG00000183091 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:7720]
Coordinates
chr2:152580774-152582074:-
Coord C1 exon
chr2:152581967-152582074
Coord A exon
chr2:152581371-152581475
Coord C2 exon
chr2:152580774-152580878
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCATTATTTGGGCAGGTT
3' ss Score
6.35
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AATAAATACAAGGAGAAGTTTGAGAAAACAAAAGGACAGCCATACGCCAGCACAACAGATACTCCAGAACTTCGCAGAATCAAAAAAGTACAAGATCAACTCAGTGAG
Seq A exon
GTTAAGTATCGAATGGATGGTGATGTTGCTAAGACTATATGTCACGTAGATGAAAAAGCAAAGGATATTGAACATGCAAAGAAAGTGTCGCAGCAAGTCAGTAAG
Seq C2 exon
GTTTTATACAAGCAGAACTGGGAAGACACCAAGGATAAGTACCTGCTTCCTCCTGATGCCCCTGAACTTGTCCAGGCCGTTAAGAACACCGCCATGTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183091-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.029 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
C2:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGTTTGAGAAAACAAAAGGA
R:
CTTGCTGAACATGGCGGTGTT
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)