GgaEX6043240 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36907618-36909016:-
Coord C1 exon
chr7:36908909-36909016
Coord A exon
chr7:36908042-36908146
Coord C2 exon
chr7:36907618-36907722
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGGTATGCATTGATTTAGGTT
3' ss Score
6.59
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AACAAGTACAAAGAAAAATTTAATAAGGAAAGAGGAAAGCCATATGCTTCCACAATTGATACCCCAGAAATCCGGAGAATCAAGAAAGTGCAAGAGCAGCTCAGTGAG
Seq A exon
GTTAAATACCGCATGGCTGGTGAAGCTGCTCGAACTATTTGCCATGTTGATGAAAAGGCTTGGGATATAGAACATGCAAAGAAGGTATCTCAGCAAGTGAGCAAG
Seq C2 exon
GTGTTATATAAACAGAACTGGGAGGAGAATAAGGACAAGTACTTACTTCCCCCTGATGCCCCAGAGCTTGTAAATGCAATAAAAAATACAGCAATGTTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(50.0=37.1)
C2:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTAATAAGGAAAGAGGAAAGCCA
R:
TGCATTTACAAGCTCTGGGGC
Band lengths:
170-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]