DreEX0051914 @ danRer10
Exon Skipping
Gene
ENSDARG00000077367 | ntng2a
Description
netrin g2a [Source:ZFIN;Acc:ZDB-GENE-081105-186]
Coordinates
chr8:12028590-12062807:+
Coord C1 exon
chr8:12028590-12028613
Coord A exon
chr8:12052860-12054473
Coord C2 exon
chr8:12062640-12062807
Length
1614 bp
Sequences
Splice sites
3' ss Seq
TATTCTGTCCACAATTACAGTTT
3' ss Score
6.29
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTGAGGCGTCGGGAACGTCTGGCA
Seq A exon
TTTCCGCAGCACCAGATGTGATACCCGATGCAGCCACCACAGCAACTGACACCGTCTTTGCAACAACTGCCTTTGGTGCAAGCAATCCACGATCTGCTCTTCCTGAGGTTACTGATGCACTTGCTTCATCATCTGATGCCACTGCAACAACACTTAATATGGTCATCCGAGCAACCATGGCAACAACACCTTCTGTAACCATGGCAACTTCTGAAACAACATCAGATAACACTATTCAGCTGCCAACATCTCCTTCTAATGATGCAGTTTCACCTCCAGTGGAAACCAGTACAGCGGGTTCAGAAAATATGGCAGCTGTTCCTTCAACTGATGCAACAATGAAAACAGTTGATGAACTCCCTCCAGACATTGATGTGGTCGTCTCAGCAACTAGTGTTCCTTTACCTTCTCCATCAGATAGAGATGCACCTGTAATTGATGCTGACCCCACTATAACAGATGCTCCTGCACCAGAGGCTGGTTCTATTGCACCTGCAAGAGATGCAGATGCTCCTGCCACTGCTGCTGTGGCTCTTGAAACTGATGAGGATGCAGAAGTTACAAATGTGTCAGATGAAACCAAAGCAGCTCCTGAAGGTCCGGGTGATGGTGCTGAAGTCGTCATGAGAAGTGAAGAAACAGTCAGCACTGACGTAGACTCGCCTACATCGGGTGTAACTCTTCTGACAGGTGAGCCAGTGCCTGATGCTACTCCTCCACCTGAGAGTAAACCTCCACCTGAGACCAAGGAGGAAAAAACAGAAGCCAAAGATAAAGACACTCCTGAGATTCAAGCTCCTTCTGAAGTGGAAGAGAAGATTGAAGAGCTTCTCGTTGAGATCAAGGAGGATAAAACGGAAACAGATTTGGTCAATGAAGATGAAGATGCTCCTGACATTAAACCTTCATCTGAAGTAGAAGAGAAACGTGACGTTCCTCTTGTTGAGATCAAAGAAAAAGAAACAGCTACAAATTTGGAAAATGAAGATAAAGATGCTTCTGACATTAAACTTCCATCTGAAGTAGAAGAGAAGATGGAAGATCTTCCTGTTGAGATCCAGGAGGAAAAACAGAAAACAAATGTTGAGAATGAGGATAAAGATACTCCTGACATTAAACCTTCATCTGAAGTAGAAGAGAAGAGTGAAGTTCCTCTCGGTGAGACCACGGAGGATAAACCGTCAACCAAGCTGGATGATAAAGATACTCTTGACGTTAAAACTTCTCCTGAAATAGAAGAGAAGAATGAAGATCCTCTTGTTGAGACCAAGGAGGAAAAAACAACAAAGAAAGATGAAGATGCTTCCGACAGTAAACCTCCATTCAAAGTAAGAGAAAACAGTGAAGAACCCAAAATGGAAAAACCCGAAACAAATTTGGAGAAGAAAGATAACAACACCCCTGATATTAAACTTTCATCTGAAGTAGGGGAGAAGAGTGAACTTCCTATTGCTGAAACCAAGGAGAAAAAAGAGATAAAGAATTTAGAAAAGAAAGATAAAGATGCCCCTGATCGTAAACCTTTATCCAAAGTAGGAGAAAACAGCGAAGAGTCCAAGGAATCGAAAACAGCTTTAAATTCGGAGAAGAAAGATAAAGATGCAGAAGCCTCAG
Seq C2 exon
ACTGCGAGTGCAACGGTCACTCAAATCGCTGCAGTTACATTGATTTCATCAACATTGTGACTTGTGTGAGCTGCAAACACAACACTCGAGGGCAGAACTGTCAGCACTGCCGCCTCGGATACTTCCGGAATGCTTCGGCCGAGTTGGACGATGAGAATGTTTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077367_MULTIEX1-4/7=C1-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.929 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=96.4),PF101424=PhoPQ_related=PU(29.0=51.8)
Main Inclusion Isoform:
ENSDART00000114432fB4364
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]