DreEX0051917 @ danRer10
Exon Skipping
Gene
ENSDARG00000077367 | ntng2a
Description
netrin g2a [Source:ZFIN;Acc:ZDB-GENE-081105-186]
Coordinates
chr8:12028590-12071148:+
Coord C1 exon
chr8:12028590-12028613
Coord A exon
chr8:12062640-12062807
Coord C2 exon
chr8:12071014-12071148
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATCTACTCTTTCTCCATCAGACT
3' ss Score
7.35
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTGAGGCGTCGGGAACGTCTGGCA
Seq A exon
ACTGCGAGTGCAACGGTCACTCAAATCGCTGCAGTTACATTGATTTCATCAACATTGTGACTTGTGTGAGCTGCAAACACAACACTCGAGGGCAGAACTGTCAGCACTGCCGCCTCGGATACTTCCGGAATGCTTCGGCCGAGTTGGACGATGAGAATGTTTGCATAG
Seq C2 exon
AGTGTAACTGTAATCAGCTGGGCTCCATACACGCCCGCTGCAATGACACAGGCTTCTGCCAGTGTCGAGACGGCACCGCGGGCCAGAAGTGTGAGGACTGTCTGCCTGGATATACCTGGAAGCAAGGCTGCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077367_MULTIEX1-7/7=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=96.4),PF101424=PhoPQ_related=PU(29.0=51.8)
C2:
PF101424=PhoPQ_related=FE(43.0=100),PF0005319=Laminin_EGF=PU(79.2=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]