HsaEX6063621 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132230572-132241044:+
Coord C1 exon
chr9:132230572-132230595
Coord A exon
chr9:132239104-132239271
Coord C2 exon
chr9:132240910-132241044
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCCCACTTGGCCGGCCCAGACT
3' ss Score
2.34
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTGCCACTGCAGGTTCCTTTGGCA
Seq A exon
ACTGCGAATGCTACGGTCACTCCAACCGCTGCAGCTACATTGACTTCCTGAATGTGGTGACCTGCGTCAGCTGCAAGCACAACACGCGAGGTCAGCACTGCCAGCACTGCCGGCTGGGCTACTACCGCAACGGCTCGGCAGAGCTGGATGATGAGAACGTCTGCATTG
Seq C2 exon
AGTGTAACTGCAACCAGATAGGCTCCGTGCACGACCGGTGCAACGAGACCGGCTTCTGCGAGTGCCGCGAGGGCGCGGCGGGCCCCAAGTGCGACGACTGCCTCCCCACGCACTACTGGCGCCAGGGCTGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-'27-26,'27-23,36-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAGGTTCCTTTGGCA
R:
CCAGTAGTGCGTGGGGAGG
Band lengths:
139-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains