DreEX0051918 @ danRer10
Exon Skipping
Gene
ENSDARG00000087100 | ntng2b
Description
netrin g2b [Source:ZFIN;Acc:ZDB-GENE-110502-1]
Coordinates
chr21:3821039-3860613:-
Coord C1 exon
chr21:3860578-3860613
Coord A exon
chr21:3830888-3831055
Coord C2 exon
chr21:3821039-3821173
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTTTGGCTTTCAGATT
3' ss Score
11.34
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTTCTCAGGCATTGGCTGGTTCTTCTTCTGGATCCA
Seq A exon
ATTGTGAATGTAACGGACACTCGAATCGCTGCAGTTACATCGACTTCCTGAACATAGTGACGTGCGTGAGCTGCAAACACAACACGAGGGGGCAGAACTGCGAACACTGTCGCATGAGCTACTACAAAAACATGTCTGCAGAGCCTGATGATGAGAACGTGTGTATCG
Seq C2 exon
AGTGTAACTGTAATGCGTTGGGCTCAGTTCATGACCGCTGCAACGGCACCGGCTTCTGTCAGTGTAAAGAAGGCACAACCGGAGTCAAATGTGATGAATGTCTCCCGGGCTACTATTGGAAACAGGGCTGTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087100-'1-4,'1-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATTGGCTGGTTCTTCTT
R:
GCCCTGTTTCCAATAGTAGCCC
Band lengths:
158-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]