MmuEX6100065 @ mm9
Exon Skipping
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29051167-29054435:-
Coord C1 exon
chr2:29054334-29054435
Coord A exon
chr2:29052502-29052669
Coord C2 exon
chr2:29051167-29051301
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCCCACTTGGCTGGTCCAGACT
3' ss Score
3.94
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTGTAGCTATCTCTGTCGCTGTCCCTTCCCAAGCCAAGGACTCTACGCTTTTCGAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAATTTCAAG
Seq A exon
ACTGCGAGTGCTACGGCCACTCCAACCGTTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGCGTCAGCTGTAAACACAACACTCGAGGCCAACACTGTCAGCACTGCCGCCTGGGCTACTATCGCAATGGCTCCGCAGAGCTGGATGATGAGAACGTCTGCATTG
Seq C2 exon
AATGTAACTGTAACCAGATCGGCTCTGTGCACGATCGATGCAATGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513-'16-20,'16-19,20-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PD(93.8=78.9)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTATCTCTGTCGCTGTCCC
R:
GATAGCATCCTTGGCGCCAG
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: