GgaEX7009793 @ galGal4
Exon Skipping
Gene
ENSGALG00000003677 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr17:6471820-6482265:+
Coord C1 exon
chr17:6471820-6471846
Coord A exon
chr17:6481571-6481738
Coord C2 exon
chr17:6482131-6482265
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTCCTCTCTGCAGACT
3' ss Score
12.32
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTGCAGCTGCAGGCTCAGCCTTTGGCA
Seq A exon
ACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATCGACTTCCTGAACGTGGTGACCTGCGTGAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGCCTGGGCTTCTACCGCAACAGCTCGGCGGAGCTGGACGATGAGAATGTATGCATAG
Seq C2 exon
AATGTAACTGCAATCAGATCGGCTCCCTGCACGACCGCTGCAATGAGACCGGCTACTGTGAATGCAAGGAAGGGGCCACGGGGCCAAAGTGCGACGACTGCCTGCCCAACTACTACTGGAGACAGGGCTGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003677-'5-16,'5-15,8-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7),PF079748=EGF_2=PU(5.6=4.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]