BtaEX6046953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007235 | NTNG2
Description
Bos taurus netrin G2 (NTNG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099025]
Coordinates
chr11:102345570-102355355:+
Coord C1 exon
chr11:102345570-102345596
Coord A exon
chr11:102353214-102353381
Coord C2 exon
chr11:102355221-102355355
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCATGCTCGGCCGGCCCAGACT
3' ss Score
1.12
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGCCGCCGCAGGCTCCGCCGTCGGCA
Seq A exon
ACTGCGAGTGCTACGGCCACTCCAACCGCTGCAGCTACATTGACTTCCTGAATGTGGTGACCTGCGTCAGCTGCAAGCACAACACGCGGGGCCAGCACTGCCAGCACTGCCGTCTGGGCTACTACCGAAACGGCTCTGCAGAGCTGGACGACGAGAACGTGTGCATCG
Seq C2 exon
AGTGTAACTGCAACCAGATCGGCTCCGTGCACGACCGGTGCAACGAGACCGGCTTCTGCGAGTGCCGCGAGGGTGCGGCGGGGCCCAAGTGCGACGACTGCCTCCCCACGCACTACTGGCGCCAGGGCTGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007235-'6-16,'6-13,13-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7)
Main Skipping Isoform:
ENSBTAT00000009516fB4828
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]