RnoEX6016201 @ rn6
Exon Skipping
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7743625-7746899:-
Coord C1 exon
chr3:7746798-7746899
Coord A exon
chr3:7744982-7745149
Coord C2 exon
chr3:7743625-7743759
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCCTACTCGGCTGGTCCAGACT
3' ss Score
2.65
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
CTGTGACTATCCCTGTCGCCATCCCTTCCCAAGCCAAGGACTCTACACTTTTCCAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAGTTTCAAG
Seq A exon
ACTGTGAGTGCTACGGGCACTCCAACCGCTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGTGTCAGCTGCAAACACAACACTCGAGGCCAGCACTGTCAGCACTGCCGCCTGGGTTACTATCGCAACGGCTCTGCCGAGCTGGATGACGAGAACGTCTGCATCG
Seq C2 exon
AATGTAACTGTAACCAGATCGGCTCTGTGCACGATCGTTGCAACGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694-'21-16,'21-15,22-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTATCCCTGTCGCCAT
R:
TAGCATCCTTGGCGCCAGTAG
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]