MmuEX6100065 @ mm10
Exon Skipping
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29195647-29198915:-
Coord C1 exon
chr2:29198814-29198915
Coord A exon
chr2:29196982-29197149
Coord C2 exon
chr2:29195647-29195781
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCCCACTTGGCTGGTCCAGACT
3' ss Score
3.94
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTGTAGCTATCTCTGTCGCTGTCCCTTCCCAAGCCAAGGACTCTACGCTTTTCGAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAATTTCAAG
Seq A exon
ACTGCGAGTGCTACGGCCACTCCAACCGTTGCAGCTACATTGACTTCCTGAACGTGGTGACCTGCGTCAGCTGTAAACACAACACTCGAGGCCAACACTGTCAGCACTGCCGCCTGGGCTACTATCGCAATGGCTCCGCAGAGCTGGATGATGAGAACGTCTGCATTG
Seq C2 exon
AATGTAACTGTAACCAGATCGGCTCTGTGCACGATCGATGCAATGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513-'40-37,'40-36,41-37=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=PU(91.7=95.7)
Main Skipping Isoform:
ENSMUST00000048455fB2765
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTATCTCTGTCGCTGTCCC
R:
GATAGCATCCTTGGCGCCAG
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types