DreEX0052790 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1411302-1422196:-
Coord C1 exon
chr9:1422093-1422196
Coord A exon
chr9:1415958-1415990
Coord C2 exon
chr9:1411302-1411470
Length
33 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGTGTCCTCCCCCAGGTC
3' ss Score
11.05
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
AGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACATGCAG
Seq A exon
GTCCAGTCTCTCCCCCAGTCGCACAGTGCTAAA
Seq C2 exon
GTTCCCCTGAGTGCAAGCATGTCTCAAGTGCGCCTCCACTCCTCCAATCCTAACCTGTGCGCGGAGCTGGCTGATTTCCAGGCCCCCGTCACGCGTCTGACTGACGGCATCGACAGCGCCGGCGACTACATCAAACTGCAGGAAGATTTCTGCATCATTGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000093412fB4438
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTGCCAGTCCAGTCTT
R:
GAGACATGCTTGCACTCAGGG
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]