DreEX0052789 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1411302-1422196:-
Coord C1 exon
chr9:1422093-1422196
Coord A exon
chr9:1419452-1419544
Coord C2 exon
chr9:1411302-1411470
Length
93 bp
Sequences
Splice sites
3' ss Seq
TATGTGTCCATGTACTCTAGAGT
3' ss Score
6.65
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACATGCAG
Seq A exon
AGTAACTGTGTAGACTTGTCAAAGAAAGAAAAGCGCGTCAGCAGAAGATGGAGGACTAAAAGTGTCAGCAAAGATGCAAAATTGCAGCAGCAG
Seq C2 exon
GTTCCCCTGAGTGCAAGCATGTCTCAAGTGCGCCTCCACTCCTCCAATCCTAACCTGTGCGCGGAGCTGGCTGATTTCCAGGCCCCCGTCACGCGTCTGACTGACGGCATCGACAGCGCCGGCGACTACATCAAACTGCAGGAAGATTTCTGCATCATTGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.129 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGACACAGTCAGCTCC
R:
TGCAGTTTGATGTAGTCGCCG
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]