RnoEX0062533 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63411344-63421257:+
Coord C1 exon
chr3:63411344-63411447
Coord A exon
chr3:63412202-63412294
Coord C2 exon
chr3:63421092-63421257
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAACTATTTGTGTAATGTAGGCT
3' ss Score
6.46
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAGCTCCTGCAGAACCTGGAGATACTTCAGAGAACTCAGTCGGCTCCTAACTTCACTGACATGCAG
Seq A exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGCTGGAGGACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
Seq C2 exon
GTTCCTTTCAGCGCCACCATGTCACCCGTGCGTCTGCACTCCTCCAACCCCAACCTTTGTGCAGACATTGAGTTTCAGACCCCTCCTAGCCACCTCACCGACCCTCTGGAAAGTTCCACAGATTATACCAAGCTACAAGAAGAATTTTGTCTAATTGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX3-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.403 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACATTGCCAGTCAAACCT
R:
ATGTCTGCACAAAGGTTGGGG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]