GgaEX0013482 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16546777-16556369:-
Coord C1 exon
chr7:16556266-16556369
Coord A exon
chr7:16555232-16555324
Coord C2 exon
chr7:16546777-16546942
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAACTATTTGTGTAATGTAGGCT
3' ss Score
6.46
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATCTTGCTCATTGTCAGTCAAACCTTGTGGAACTCAGTAAACTTCTTCAAAATTTAGAAATACTACAGAGAACTCAGTCTGCACCGAATTTCACAGACATGCAG
Seq A exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATGCAAAAATTCAACTTCAG
Seq C2 exon
GTCCCTTTCAGTGCCACGATGTCTCCGGTTCGGCTGCATTCGTCCAATCCCAACCTTTGTGCAGATATCGAGTTCCAGACCCCCCCAAGCCATGTAACAGATCCTCTAGAGTGCTCTACAGAGTACATGAAGCTTCAAGAAGAATTTTGCTTGATGGCACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.379 C2=0.201
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGTCAAACCTTGTGGAACT
R:
GGGGGTCTGGAACTCGATATCT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]