BtaEX0025489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18513508-18524601:-
Coord C1 exon
chr2:18524498-18524601
Coord A exon
chr2:18523850-18523942
Coord C2 exon
chr2:18513508-18513673
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAACTATTTATGCAATGTAGGCT
3' ss Score
4.97
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACCTTGCACACTGCCAGTCGAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCAGCACCTAACTTTACTGACATGCAG
Seq A exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
Seq C2 exon
GTTCCTTTCAGTGCCACCATGTCCCCAGTTCGCTTGCATTCCTCCAACCCCAACCTTTGTGCAGATATTGAATTTCAGACCCCCCCTAGCCACCTCACAGACCCTCTGGAAAGTTCAACGGATTATACAAAGCTTCAAGAAGAATTTTGTCTAATTGCACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405_MULTIEX2-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.484 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACACTGCCAGTCGAA
R:
TCTGCACAAAGGTTGGGGTTG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development