GgaEX0013482 @ galGal4
Exon Skipping
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14953174-14958940:-
Coord C1 exon
chr7:14958837-14958940
Coord A exon
chr7:14957803-14957895
Coord C2 exon
chr7:14953174-14953236
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAACTATTTGTGTAATGTAGGCT
3' ss Score
6.46
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATCTTGCTCATTGTCAGTCAAACCTTGTGGAACTCAGTAAACTTCTTCAAAATTTAGAAATACTACAGAGAACTCAGTCTGCACCGAATTTCACAGACATGCAG
Seq A exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATGCAAAAATTCAACTTCAG
Seq C2 exon
TCCAACTCTTCTGGAGATAACATTAGCGAAGTACCTAGCTATATAAGTCTCTGGCATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'10-17,'10-16,11-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.484 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGCTCATTGTCAGTCAAACCT
R:
CTGTGTATGCCAGAGACTTATATAGC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]