GgaEX0013484 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16550366-16555324:-
Coord C1 exon
chr7:16555232-16555324
Coord A exon
chr7:16550603-16550665
Coord C2 exon
chr7:16550366-16550440
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTGTCCACTGCAGTCC
3' ss Score
9.75
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATGCAAAAATTCAACTTCAG
Seq A exon
TCCAACTCTTCTGGAGATAACATTAGCGAAGTACCTAGCTATATAAGTCTCTGGCATACACAG
Seq C2 exon
GAAGGGCCGGCACCGAAGGGCCAGTTCAGCACAACACGACGCCGGCAGAGACTAGCAGCTGCAGTGGCTACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'17-16,'17-15,18-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=0.143 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAGCGGGTCACAAGAC
R:
CACTGCAGCTGCTAGTCTCTG
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]