GgaEX0013483 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16546777-16556369:-
Coord C1 exon
chr7:16556266-16556369
Coord A exon
chr7:16550366-16550440
Coord C2 exon
chr7:16546777-16546942
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCATTCACTGTCAGGAA
3' ss Score
8.02
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCTTGCTCATTGTCAGTCAAACCTTGTGGAACTCAGTAAACTTCTTCAAAATTTAGAAATACTACAGAGAACTCAGTCTGCACCGAATTTCACAGACATGCAG
Seq A exon
GAAGGGCCGGCACCGAAGGGCCAGTTCAGCACAACACGACGCCGGCAGAGACTAGCAGCTGCAGTGGCTACAACA
Seq C2 exon
GTCCCTTTCAGTGCCACGATGTCTCCGGTTCGGCTGCATTCGTCCAATCCCAACCTTTGTGCAGATATCGAGTTCCAGACCCCCCCAAGCCATGTAACAGATCCTCTAGAGTGCTCTACAGAGTACATGAAGCTTCAAGAAGAATTTTGCTTGATGGCACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.533 C2=0.201
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGTCAAACCTTGTGGAACT
R:
GGGGGTCTGGAACTCGATATCT
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]