HsaEX0044930 @ hg38
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178339672-178349389:+
Coord C1 exon
chr2:178339672-178339764
Coord A exon
chr2:178344286-178344360
Coord C2 exon
chr2:178349224-178349389
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCATTCACCGTCAGGAA
3' ss Score
7.95
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
Seq A exon
GAAGGGCCACCCGCGAAGGGCCAGTTCAGCACAACTCGGCGCCGGCAGAGGCTAGCGGCAGCAGTGGCTACAACA
Seq C2 exon
GTTCCTTTCAGTGCTACCATGTCACCAGTTCGCTTGCATTCCTCCAACCCCAACCTTTGTGCAGATATTGAATTTCAGACTCCCCCTAGCCACCTCACTGACCCTCTGGAAAGTTCAACAGATTATACAAAGCTGCAAGAAGAATTTTGTCTAATCGCACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156_MULTIEX1-15/15=14-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.560 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAGCGGGTCACAAGAC
R:
TTCCAGAGGGTCAGTGAGGTG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development