RnoEX0062534 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63412202-63421257:+
Coord C1 exon
chr3:63412202-63412294
Coord A exon
chr3:63416257-63416331
Coord C2 exon
chr3:63421092-63421257
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCATTCACTGTCAGGAA
3' ss Score
8.38
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGCTGGAGGACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
Seq A exon
GAAGGGCCACCTGCGAAGGGCCAGTTCAACACAACTCGGCGCCGGCAGAGGCTAGCGGCAGCGGTGGCTACAACA
Seq C2 exon
GTTCCTTTCAGCGCCACCATGTCACCCGTGCGTCTGCACTCCTCCAACCCCAACCTTTGTGCAGACATTGAGTTTCAGACCCCTCCTAGCCACCTCACCGACCCTCTGGAAAGTTCCACAGATTATACCAAGCTACAAGAAGAATTTTGTCTAATTGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX3-4/4=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.640 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAGCGGGTCACAAGAC
R:
AACTTTCCAGAGGGTCGGTGA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]