RnoINT0105827 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63412202-63421257:+
Coord C1 exon
chr3:63412202-63412294
Coord A exon
chr3:63412295-63421091
Coord C2 exon
chr3:63421092-63421257
Length
8797 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ATGTATACCTTCCCTTCCAGGTT
3' ss Score
10.46
Exon sequences
Seq C1 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGCTGGAGGACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
Seq A exon
GTACCGCTTTTGCTTTGCCTTTCTTTGGGTTTCCCTCTGTTCCCGTTCTGTACCCGCCCCTGGGTGTGAGATCGGAGGGATAGCTTCACTGCTTGAAAGACTGTCCTTTGGAAGAGTCGTGCTAACTAAAACTCAAATTAACTGTAGTTAATTGTGCATAAGTACAAACACCTTGTAAATGATCCAATGAGGATTTCCGGCCTCAGTTCTAACCTTTGAAACATTAAAACTTAGAGAGAAAGCCACTTTAAAATCAAAACTGGGAAGCCCGTGGACAGTAATATATGTTCCTTTCCAGAGTCTCGGGGCTAGAGGGCTCTTTTATATGGGTGAACTTTGTCCACGGTTTTATCAAGGCCTTGTAGGTTAAAGATCAACACACCCGGGTGTTACTGTGATCACTGGTTCGCTGGCCTCGTAACTTAGACGTTTCTGTTAAGCTTTCTGGACTTCATTTGCTCCTGCTCAAGTTGCAGAATTAATTTAATGATCACCGAGTTCTGTCTCAACTCCGAAATCCTATAATTACAAAGGTAAATAGTATCTGGCCTACAAGATCATTCTAAAATTGGAACCAAAATCTCCACAGCTCGTGATACATTTACTTGAAATAAAAATTTTAATTGCAATAAATAGCCGTATATTTTCAAGTATGACCCTCTTAGGTTATAGCATTTCGATGATACAGGATGCCTAAAACCCACGTCATAAATCATATTACTTCCAAATCTTGACAAGAATCTTTAGCATTCTTATCTTAGCTGTGTATGATTGCTTACCTGCCAGTTAAAACTAGTCAGTTTCATTTTTAAAAGATTATAATGTTGGTGCATTTAGATCTTAACACAAAGTGACTGTGTCCCACTGTTCTTCCTTTTCCTCTGAATGATTAACCAAAGTAATCCTTCCCCGATTCCAGCTGCTTTAATGGCATCCTTTGTCTTCTCACTCTGAATGTGTCAATAATGAACTGTTAGTGTGCTTCCTAATCTGATGTCATTCACGGCAGTTTTTATAAGCGCTAAACAGCAGTGTTCCTACTTAGAATATCTGTATTCCATGAATGTAATTATGTGTGTTCCTCTGAGCGATATAGTTTCCTGTGTTTTTCTCATTCGGTTCATAAAATTAGTGCTCTAGGGAAAACAAGCCAAGTGTTTGGTTTTTTTTTTTTTCACAAGAAACCAGTAAGATGGTCATTTGTTTTGAGGTTACAGTTCGTCTTGCTTTTAGGCTTTGTGTTCATGGGTAGAATCATTTTCGCTACCAGAAGCTTTCCTTTAAATAAAAGAATTGGGGAATGTTAGTGTCCTAAGAACATACCTGTTGGTGATAGATACTGTTTGAATCTGGTTGTTTAAGGCATGCCTCTGGACAGCCATTGTCTTGAGCGGACTGGCTCTTCACAAACCTGCACACAGCACCCCTGGCTGACTGTGGAGCCAGGACTTCTACCACAAGCTCCATGGTCCATCTTTCCCCTGGAGGAAACAGAGTGCAACTCTGGTTAATAGATGTACAGAGAAATCACAAGGATTGTTTTGAGTCATCAGAAGACACTGGTGCCAAAGCAGAGAAATCTTTGAGTGGCTTCTTTGAATCTCTCACCATTGTCTTGCTTTGTTTGACTTAGGAGGGACACAAGTGACCTGGTGATTCTTACATAGATGAGGAATCTGAGATTACCTCGTCCCTGCAGTCACTTTACACTTTCAAGAGGAGCAGATGCAGTTTTGAGTAGAAACGTAGACTTTGGATAAGCTTGTGGTCACTCCCAGAAAGCGTTTACTTCCGCTTGGACTTCAAAAGCATTTACTTCCGCTTGGACTTCGGTGTGTATCGTTGGCTGGAGGGCTGCAGGATTGGCTCTCAGTCCCCTTGCACATTTTCTGCCTGCTGAAGGCAGCAGGTCTTCCAGGAGTCTTCAGGGGTCTCTCTAACTGGAACAGGACTGAAGCTCCTTCAACATGCGCACCTCATGGGGATGAGAGAGCTCACCCAGCAATGTCTGTGACCAGCAGGAACATCCGTATTTAGCAGTCTCTTGCCTCCAGAAAGGGCCAACATTTATTTTTACAGAGTAGATTAGTGACTTCTTACCCTAGCTGTTTTCCTTCCTATGTTCAAAGCTTTTTGGTTAGAATTCCATCTTACTGCTGCCAAGAATTTGTTTCCAGTTCCTTGTCATCTCGCTTTCCAGGATGACCCCATCAAAGCCAACTTGAGAGACTCTAGCATCGTCGTAACTTGTTTTTCTGTTGCTTACCATCTAGGTCATTAGCCAGTTATGAAGGAAGCGAGGCTGTGTGGCAGTCGCACTTGGCTGTTGATCATTATCAAGGTTGATATTGTGTCATTAAGTTTTGCATCCACCATTCTTTAGTAGCTGTCATTGTGAAAGAATTATGAAATAAATTATTTTTTTAAAAAAATGACTCCAGGAAGTAGAAATGAAACTAGAACATGAAACATGTGCTATACCAAATATTTGATGACTTCGTCTTGTATAGGGTACATTGCTCACCTTAGTGGACCATGAGGTTAAATGCTAGACTCATCTGGTCATATTCATACGAGATGCCACTGGCTTGCTTTCAGAAATCTCTTATGTAACTCATGGAGTCAGCTTCTGTCTGTGAGGATTATCTTTAAAGAAGATAGGCATCCCAAACTTCGCGTTTTCTGGTTCTAATAAAAATCTAAGTAAAACTATACAGTCAAAAGTGCTGTAGGAGAGAAGGACTGTGTCCCTGTGTCATTCATAGAGCAAATTAGATAATAGGCCCTAGATACTGGAGAGATCGGATAGAGTGGGAAAAGTACATAGTAGCCGATAAAATTACCCATCATTCACAAGAAGCTTCTGCCCTAGTTCCACATCCCACAATTATACCGACATGTGAAGGCAAGGTCTTCCTTCATTACATTAAATGTAGAGATTTTGTGTAGAAAACCTTTGTAGAAAATAAATTATGTGTAGTGGCATACATAAATATGCAAAAGATTTGTGAAGTAGTTTGAAAAGTTTAAGAGCATCAGAGATGTGAGAATTCAAAATATTTGTCATTCCAAACAGATGAGAGTAGTCGTGATGGATTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATCGTTGGGTTAATATAAGAAATCTCACTTTGGCTACCTGGAGATGGAAATATTGTCTGCTAGCTTGAAGTCTATGACACTGAGGTGACTTTGAAGGATGAGAAAGAAATGCCATCACCTCTGGGCTTCTTTGGGTTTGTACAGAGGTACAAATCACCAGATAAACCTGTGCTGTTGGGTGTCCATAACTGCTATTGTGAGGCATTGATCCCACACTCTGTAGCACTTGAAGGCTCTCCAGTTCCCCCACAGCCCCAGTCTAGTAGGACTGACCTCCACCTTGGGCAATTCTTTTCTAACACTAAGCCCCTGCCAGTAGACTTTTTGGTAGAGGGTTGAGTTGGGGAGTTAAAGAGCCCCGTTTCTCTTCCTTTTATTTTGTCTCTGAGTATGATTTTTTTTGCCTTTATATTTTTTATAATCACTTTCCCCAGAGCTTGCCTATTTTCTACTCTGCCATTTACTGGACGCCTTCTGACTTAATGCAGCGTGTCCTCACAGTTTTAAAGAGTGGCGAGCATGTCCGTTTTACTTTAGAATGGCAGGCTCCCCATTACTTCATTAATCCACAGGAGAGCCTTGTCTGCTCTTGGGGTAGGGATTATATTCAGGAAGTGTTTGGGCAGTCTGCACTGAGAAGAAAGCTCATTAGCTGTGACATGAGTGTCCCTCTGACTTGTCTCAACGCTCAGATTTACAGTTAAAACTCTTTTCTTCTGCCTGATCATCTTTCATCCCCCCACGAACCCCTCGTCTTCATCCCTACCCCATGTTTTTTACCCCCTTTTCTTCTCCCATTCACTGTCAGGAAGGGCCACCTGCGAAGGGCCAGTTCAACACAACTCGGCGCCGGCAGAGGCTAGCGGCAGCGGTGGCTACAACAGTGAGTGGATTTCCATCTCAAATGAGGAACTGTGTGCAAGGGTGACCCTGTCCTGATGGCGCCATCAGCGTGTGGTGGATCACCTGTGGCCTACCCCGTGGATATCACTTTCAGATGACCTCTGGCTCTCCTCGCCTGACAGGGATTGGACAGTGGGTGCTGGGTTTGGCAGAGGAGAACTAATTCGTGATCCTCCTCTTCTACTGTTATTGGAAGAAGGGTCAAAACTCAAGTCTGAGTTTGAGAAACTGATCATGGGGCTCCAAGATAGGAGGATTTTCTTAAATGGTGATATCTCATTTATTTGTTTTTCCATACTGATGCCTGAACCTTTTGTCTTTCTAAGAAGTGTCCCATGACTACAGAAATAAGTTGCACTCGTTTGTGTGCAGCAGTATGACGGCTTGAGGAGACGGCAGTGAGAGGCTAGAAAAGGTGGATTTTGATGTCATCTCTACATGGCTACCTAAAGTCCATGTAGCAAGGGAAATCATGTTATAGAAAGAATGTTGGCCTGAAAACCAGAAAATAGTGTGGAAATGAAAAAAAAAAGAAACCATGAAGTTAGATAGTATATAATCTATATGTAGACAAGTTTTTTGTTTTTTTTTTTTTGTTTGTTTTGGTTTGGTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACTACTGAGCTAAATCCCCAACCCCGACAAGTATTTTTTTACTCCTAAGAGGGGAAAGGATAGATAGAAGGGTGTAGGTGAGAATCATGACTGTCCATATACAATATGAAATAGAATACAAGATAAAAATAAACCATAGTATCAGTTCATCCCAAGATGGTGTTCACTTTTTAATACATAGCTTCTCGAGCCCATGGTAATCATGGATAATAGTTTTTTGTCTAGTACATGATTTTTATGAGTTACTAACAATTTTATCCTTGCTAAAATTAGGGTATGCTTCAAGGTTAGACTGTCTAAAAATAACGTAAAGGGTTTGACTGCACGGTAGAAAGCTCCTGCGTGAGGTCTGCTGTTTTTTCAGTTCGTAGCCAGCCCTGGCATGCTGTGTGTGTCTTAGCTACACTACAGGATAGAATTACTTATGATTATTGAAACAACCAGTGACTTGGAATTAATTAGGGGACTGACTCTGACACTCATAGTTTTACAAATATTTGAACCAAGTCATTACCGAAATTGCGTTTATGGTGCAGTGGATCTATTCAGATGTAACTAAAGGCAACTGCCTCTGGGTCAGTTAGAGATTCTGACAGGAGACACCTCGCCAGCCAAAGGAATAAACTGAACAAATCCAGATGGTCTTTAGAGAAGAAACAGTATCAGAGTCTGGGAAGCAAAGATCAGTTTTCTTGTGAAAATGCTAAGGCTTCCTCTAATAATAAACTCCCAGAATACCATGCAAGGAGGCGATGGTGTTTTCCCTGGGTTCAGTTTTTAAGCTTTGCACACAGTGAAAATAATAAAGTTAGGATTAGTACCTGTTTGCATAGAGTAAGTTTATATTTTCTAAAGTTGGAAGCAGAGTTGGCTTGTTAAAACAAGAAGCATCAATGTCCACATCCCAACGCCACTATGACCACGGAGACTATAAAATTAACTTAGATGATTCTAGTGAAAAAGGGTACGGTCAACAATTAAAATAATTACAGGAATAACCAGTATTGGGTGGCTACTGCCCTTTGGGAGCTGTACTCTGACTCCATGTCTATGAGGCATGGAAAGAATCCACCTCTGACCCCTGACCACCATCCTCAGCCCCAGTGGGCCTGATTCAGCCTCCCTGTTTCTTCCAGTGTCCCTCCTCTTCCCACTGAAGTTACCCCACATTTAAACTTGCCTCCTCATCCTAGAATCCTTGTCAGTTTTATTATCTTCCACTTAGGCATCGGGGGTGACTGGGTTTGATACCAAAGAAAAGTCTACCTGGGGAGATATTTCCAAAAATGTGTTCTCATTGGGCCTGAACACTGGCACTCAGAATGGCCAACTTTCTCCACTAGCCAAAGCGTGCAATACTTCAATTGGGGAAACACAGAAACACCGGCCCCAAGTGCAATAACACCCAGTCTCCCCAAACCAACAGTACCCCAAACAAATCCTTGAATGCATACAGCAGGATACTAATGGGAATTTTCACCCTGACTCTTAAGACTTCTTAAGCTTAATATTACTGGACACACCAGCGTATCTTCCTGGAGACCACTGCTAGATTTGGAAGCCAGCAGTTCTCCTCACAAACACCCTTCTCTTCTGGCTTACTTGTAGGTGAATTTTAAGGGGGTCCCCTAACATTTACTCCAGCTACTGGTATCAGAATGTTCCTGAACCAGGCTTCCCCCCTGTTGTAGAGCTTCTAGGAAGCCTTGAGGTCCTCCTGAGCAGAGAAGCAAGGCTCACACTCAGCACTGAAGGTTCACAGCTCCGAGTGTGGGGGGGAGGGGCGGGGGGTGGTAGCTCTCATTCCAACCCTCACTGCTGACAAGAAACTGGTTACCACTTAAAGTGTTTTCTATCCAAATGATGTCCTGTGTCAACGAATGAAAACTGAATGAGTCCCCAGGCTAAAGAAATAGTCAGTTAGATGAATACGTCCTGATTTATATTCTCTACTTTACAAATTCCTCGATTAAAATGACCCACTCAACACACTTCTCCTAAGGAAAAAGAGATAACTATTTAATTCAGTTGAATGTGTATAAAAATAGTTTCCACCTTCCCAGGAAATGGTCTAGTTGCAATTAGCTTGGAGTATTGCGAGTTCATTCCCTGTGGGTCATATACAAAGCCACCCTTCAACTGTGTTAGGGAGTCAGTTCAAAACTCAATTATGTTCAGTTATAAATTTGTAAATTGTGTTTCTGATTCAAGTATTTAGTAGAGAGGCTTTTGTCGTGCACAAATATGGGGTCTTCTTGGACGCCTCGGGTTTTTACAGTGGCTCCTCCACGGCCCCTGCTAAACTAACGTGGCCCCCTCCCCACACACTCAGAGGAAACACCCATGCTGGCTGAATGCTTGAAGATTTTTGAGTGACATGAAACTTTCCCATGAACCTCAGTGTGCTGTCTCCCAACACCAAGCACCCATGTTTGATTTTCTTAATGATCTTTGGTCCACCTTTAATTGCTTTCTACACAGGGGTCCTGTTTTTCTCTTAGTACCCCCAAAGCTTCTCTGTCATCACTATAGAGTCCCCAACATTAGGGAACCCCAGCATTCCATTCCCTCACAGGACTCATTTGATACTTCTCTGCCTCGGATCTGGGACAGAAGCAAGGTTTGAGCCTACTAAGGTAGACGGCCATTGACATCTCCCAGCACGCTCACTGTAGTTCCTCCTGAGGAAAATTGATGATGACTTTGATACCGCTGAAGGCCTCAGAGGATGTGCGTTAACTTGCTTAGTGTAGGTGGCGTGAGTGGGGACGTTTCCCATTGTCTTCCTTCCTCAGCAATAACTTCTTCCCTTTGATACCTTCCCAGAGAAAGTACTAACCATCAGAGCTGAACTACGTCAGCGGGGTCATCAGTCAAGTCATGGCCCATGGACCAGATTTTTTTTTTCTTATTTCTCTCCGCTTATCTGACTATATGAGCAAGACAAACAGAGAGCCCTTTTATTCTATCCTTTCTCGTTTATCAAATTCATAAAATTTAAAAGAAAAGCCTATTAAGGAAATGAAGTGTTTTACACGCGCGCACGCGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACACATTCTCCCACACACCAAAGTATTGCAAATTAGTCAGGGACAAAGAGTCAGCGCTTCAATTGTAGAAAATACAGCTTCTGTAGGGTCTATATTATGGCTCCTCAGGGCAGCTGAGAGAAGATCTGTGTCGTAAGATTAAAAAAGTTAGCTTCCGGGTTAGCTAGAATAGTATTTCCATTTCCCAAGAACGATTAACCAATAGCACTTGGGACCCTCAGGTTGACCCTCTAAAAAGGACAAGAAAGTGCTTTGCCCCAGCCCAAGCGTAGTCTATATCCAGTCTGGACAGGACAGTTCCTGTTGCTACTGGGGAATGCTCTACAATAATGTGACCTTTTCTACTAATGCCTTTCAGTGGTGACTAGTTCCTAAGCCACAGTCATCCAGATGACAGGGACGTGTGTGATCACAAAGGCAAATGGCAGTGACTCACATAATAGGTTTCGTTTGTGAATATGTTAATCAGTATATTTTTAAATGACCGAGTCTCTTTAATTCATTAGTGTATGTACTGTAAACTTGCTTTGTCCAGTGGCTATAGACCAGGCAAATCTTTAGGCGTATTTTTATATTTTTATTAAGATCCTGCCTAAGCTCAAAGAGAAGTGACTATAAATTGCATTCTGACTGTGGGAGAACAGGTCCACTACAAGGTTCGGGGTGCTCTTTTCCACCAGTTACTTCTAGGGACAAGTGGGGGTTCAGAGGTGTGTAGTCACTGTTCTCTGTAAGAAGGAAACCCAGTGAGAAATTCTGGAACTCTCAGAAACAAGACTAACTCCTCCCAGGCCACAGTATTTGTGAAATGAATGAGGGCTGAGGCTTTCCTGAGCGCATCGTCAGAAGGGAATGGGTTGTTGTAGTGGAAAGGAAGGGCCCTGGCTGCAGAGGAGACGGTGGTCAGGACGTGGTGACACGTGAATAATGTATACCTTCCCTTCCAG
Seq C2 exon
GTTCCTTTCAGCGCCACCATGTCACCCGTGCGTCTGCACTCCTCCAACCCCAACCTTTGTGCAGACATTGAGTTTCAGACCCCTCCTAGCCACCTCACCGACCCTCTGGAAAGTTCCACAGATTATACCAAGCTACAAGAAGAATTTTGTCTAATTGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]