GgaINT0047054 @ galGal3
Intron Retention
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16546777-16550440:-
Coord C1 exon
chr7:16550366-16550440
Coord A exon
chr7:16546943-16550365
Coord C2 exon
chr7:16546777-16546942
Length
3423 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTTACTGTTTCTTGCTGTAGGTC
3' ss Score
10.67
Exon sequences
Seq C1 exon
GAAGGGCCGGCACCGAAGGGCCAGTTCAGCACAACACGACGCCGGCAGAGACTAGCAGCTGCAGTGGCTACAACA
Seq A exon
GTGAGTGGATTTAAAAATCAAGGCATAGCTTGAAAGACGGGAAGCTGCGTAACTTGAATGCATAAAAAGCTTATGAAGCTGTTTCTTGCACTTTATGGAGGTGTCCATGCTACCCATTCTGAGCTGAGTCACTTAGAAGTGATCAGGCCTGACACAAGTGGGTGTCACAACTGTGGATCTGAGCTTGTTTTCATGGTAATGTCCCTCCTCCTTTATACAAGTGCAAGTGATGAACAGACTTGGGCCCTGCACTGTTTGAAAATAGCTTTGTTATACTCGCTATGTTATTTAAAATGGACCAAAATGATCACGTTCTGTTAGAAGATTCTCATAACGGTCTATAGCAAGACAGCGAGAATGAGATTTGCTACAAACAAACAGGAAATGGTGACACTCCTGATTTTTCTTTTTTTTAGTAACATAAGATTAGCCTTTTCATTTAAGGTACTTTGTTTACATTCCATGATCCAAAAAAGTCATATTACTACTGCTAGTGTCTATTCTTCCTTTTTGCTAATTCTCCAAGCCTTTGACACAAAATTTGGAGCTCTGAAATCAACATGCAGGCTACTAACTGGGAGTGGGAAATGCTATTTATGAAACCAAATTAGCATCATAAGTATACCTTCAGCTGCTGCTTTGTCAAGAAAGCAATTATTAGGAATGCACAATATAGATTAGTCCCTCAAAGGATTAGTGAAAAAGATGGATGGGGAAGACATAAAGATACAGGAAAAAAAGAACTCTGTGCAACGGAAGAAAAAAGTGAGCTTTAAACACATACCCCTGCCTAGCTCAAGCAGTCAGCATCAAGCAAATGTTTTCCAAGGTGTGCTGCTGCAGCCCATAGCTGAAATCCACTAGCTCAGATATGGCTTCTGCTTAAGCCCGAATAACTTGAGCCCTGCTGCCAGAACCATGAACCTCATTTACTACTATGTCCTCGTGAAAAACAAGAAAGAAATCAGTGCTCCTCCGGTTCCCAAAATAACTTGTCTAAATTTAATCCCTTGTAATCAGTTGAAGCTGTATATTGATGCAGAATATCAGTCAATAATTGATCGGTGTGATCTTATCTTCTCTGCCTTTGTACCAGAGAAATAAACCCCCATCTCAGTTTGCTGTCTCTGTAGTCTGGAAGATACAGAATTACATCAGGTAAAATGCAGAAGGGGGAGGCTTGTGTTACAACCCGTTGTACTGGGAACAGTCTGTCTCTACGTGAGCATGCAGTTCTGAAGAGGCCGATGAATGATTGGTATTTCAGCCCTTGGAGTAAAGCAGAAAGTCAGGACAAGGTGTACCTGAAGTCATGTCTTCAAGAATGAGGAAGAAAAAAACTAGAGGGATGCATCAAGAAACTAAGTACTTAAGATGATAGAAAAACTAATAGGTAATCAAGGCAGCATCAGGTCACCGTGGATGTAAAGAGAAACCACTAAAGTGAAAGAAAAAAAGAAAGGGAGGAGAGGTTCATGGGCAGTGCTTCCTTAGACTGCTAGTTATTCAAGAAAATGTGTTTGTTTGGTGTTGATTTTTTTTCATTGGTTGTGGAAAGTAACTTGGAAACTCTTCCAAGATGCAGATGAGGAGAGTTCTTATCAGTCAACAGTTAATTATTTTTGGTTCTTGTATCTAAAGCAATCAGCAAAGCAGCTACTTGTCTCTGACATGTCAGTGTTTATTTCTTGCAAGTAGTGCGATGATAATTGTAGAGCATGTGAATGCTGTTTCTAGGACATACTTTCATACTTTAAATAAAATGTTCTTTTTTCAATAAACCTCACTAAAAGAACATTGCTTTTCAGCCTGGCTAGCTGAGGTATGAGGCAGAAATGCTATCTCTAGAAGGAATTTATTCTCCATCCCTGTTAACAAAATCTTCTTGATATGAGTCAAAAATGAAGTCCAATAAAAAGCATCTACTTTGTTGGTATAGTTAGAAATCAAAACAGTGAGAGAAGAGGATAAAGTTTATGCTGGTTAGGCACCATGAAACAATTAGTCTGTGCTATATGTATATGGAAATTGAAGGGCGAGGTTGAAAATGATATTGCCAGAATGTGCTCAAGATGTGATTAATAGGTCCAGTAGGATTTTAAGGTTTTCTTCACGGAATAAGAAACCTAAGGTGGATATTGATGACAAATGTTATAGGAAGGGATTGATAGACCTATTCTTTGATGTGATCACATAACAAGGTACCAATTTCAGATACTGATAACAGTATATAACTTATCTGTTAATGTAAGAAATTATATCTTAGTAATATGACTTTTTATTTTATCTGCTGCTTTTAATCATGTCTCAGAAGACACTTTTTTTTTGCTCCATTTTTCATATTTGAATAATTACATTGGGCTGCAGTGTGGAAGTTTTTGATTTATACATTTGATCAATATCATAAAATAAATTAGCTTGAATGTGTTTAGTGGTACTTAATACTGAAGTAAAAAAAATGTAATTCTGCATGCATTGTCCTTTCATTTAGTTTGGAAAATTGGGTTCTTGCCTGGGTTTTTATGCAAATGTATTTAAATGGTAAAATTAAAACATATTGTCACACACACGTCACATATGTAAAGCGGTATACATACACTGCATTTGGAACACATAGGTAACTGTTCAGTACACATGATACATTTATATATAAAACTTCTAAGGTACGCATGTATATTTTTGTTTACTGTACTTGAAAAGTATAGAAGGAAAACTAGAAGTGAAAACTATAAGAAACTAAAGTCTTCACGGCATTTTACTTAGCTGCATCTCTTTGCATTAATTTGTGGCTCTTGTACTTTAAATGAAAATTAAGTGAAGATTTAATTTATTTTTGTTTGTTTAGATAGAAAGTGGAAAGGCTATTTGATTTTTCCCTTTTCGTTGTTGCTTGTACAATGGTTTCTACTTAAGGTTTAACAATGGTTTTCAGATTGTTAGGTAGGTTAATTTTCAACAATATATTTGAGAACAGTGTATCCTGTCTCTAGGTCTGTGGAGGAACTTGCATGTTGGTATTGTAAAAATGGATTCATACTGTATGGACTCTCCAATGACAAAATACAAAGCAGCTTCTGTTGTGGCTAGATTTTCTAGTCTTCTTTTAAGCATTAGGAAATGACCAATTTTTGTAAATGTTAGAATTGAAATATTCCACTGCTAGCAATTAGCTCAATACTTAGGCTATTTTTGTCTGTTTCAGTGAAAATTTTCAAGAACTACAAGGAATTCTGCATCAACTATGCTGTAATTTAGGACAGTAAAAAGTTACATGTTTTTTCTTACTTTGTTCTTCATGTTTCAACCAAGCGCGTTTTTTTTTTTTTTTTTTTCCCCTGAAGGAATAATTTTTATTTTGCTTCAACAGAATCAAAAAGTTGGTTTGCTCCTTAAACAGTGCATCTTTACTGTTTCTTGCTGTAG
Seq C2 exon
GTCCCTTTCAGTGCCACGATGTCTCCGGTTCGGCTGCATTCGTCCAATCCCAACCTTTGTGCAGATATCGAGTTCCAGACCCCCCCAAGCCATGTAACAGATCCTCTAGAGTGCTCTACAGAGTACATGAAGCTTCAAGAAGAATTTTGCTTGATGGCACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.201
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]