HsaINT0118677 @ hg19
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179209013-179214116:+
Coord C1 exon
chr2:179209013-179209087
Coord A exon
chr2:179209088-179213950
Coord C2 exon
chr2:179213951-179214116
Length
4863 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTTGTATCTTCCCCTTTCAGGTT
3' ss Score
12.86
Exon sequences
Seq C1 exon
GAAGGGCCACCCGCGAAGGGCCAGTTCAGCACAACTCGGCGCCGGCAGAGGCTAGCGGCAGCAGTGGCTACAACA
Seq A exon
GTGAGTGGATTTCAATCTCAAGTGGAAGTTTAATAAGAATGAGAACCTGTGTACAAGGATGACTCCCCTGTCCTGATGGTGCCACTGGTGTGTGATGGCATCACCTGTAGCCCAATCATGGCAGCATAGCTTTCACATGTTCTCTGGCTGTCTTTGCATGGCAGGAGTCGAACACGGGTATTCCTTTTTACAATGGAGAACTATTATATAATCTAGTTCTTCTACTATACATGAAGACATAATTTAAGTCAAATTTGCAAAATTGAGTACAGTGCCCCATGATGTGAGCTTTCCTTAAATTATATTGTTTTTTTTTCTTTTTGACCATACTGATATTGGAACTTTTGCTAACTGATTTCTCTTTTCCTAAGAAAAGTCATGTTACTACAGGCATAAATTGTGCTTTTTTTTGTAGCAGTGTGACTATTTGAAAAGGATGTGAGAATAAAGAAATGAGAGGGTAAGAAAAGGTGAATTTTGCTGTCATCTCTAAATGGCTACCCAAGTTACACTTAGCAAGGGAAAATTGTTTTCTGAAAAGAATATTGACATGAAAATTAGAAACTGTAGTGTGGAAATGACAAAAAAAAGACAGTTTTATGGTATTTAAATCCATATCTAGAGGTTTTTTTTTCTGAGAGAAAATAGAATGGATTTAAGGAGAGTAGAGAACATATCGAGGTAGATAAGGCAAATGGATAGTGAGTGACTTGTCTACAGAATATAAAATAGACTATCAAAACACAAGAACTCCTTGCTGGATAAAAGCCAATTATAATATTTGTTTAATCATGAGCACCTATGAACATCTTAAAATATAGATTACTGAGTTCACAGCAATCATAGATTTTAGTTTTTTGGCTATTAGATAATATTTCCTTAATTAACAGCAGTCTTGCTGTCACTAAGGGTGGAATGTATTTTAAGACTAGAATTGCTGAAAAAATATGAAAAAGTTTTGGCTGCATTGCAGGAGAATGGATGCTGGTATGAGGATGGGTGGCTTTCTACTTTATGATTAGTAATTGGCTCTTGCCTTATATGTGGGTGTTTAGCTAGACTGAGAAACAAATTTGCTTTTGATTATGAAATGAACCAGTGACTTGGAATTTATTAGGGAAATGACTCTTAAACTCACAGTTTTGTAAACATTTGAACAAACAAATTATTGAAATAGCTTTCATGGTCCATGTATATCTTATGCATGTATTCAAATGCAGATGAATAAATCCCATGACACTGATGTGGTAACAGATTCTGACAATAGATGCATATATAATCAGTTAAGTATTATTAAAGGTAATTTTCCATTTATAAAATTAAGAAATACACATGGTTATTAGAGAGAGAACAACAACTTAGTATGGAAAGGAACAGTCCATCATTTTATGAAAACACTGTTTTCTTAAGCAATATACATCTAAGATGGCATGCAGAGAAGTGATTCTGTCTCTTCTGTGTTCATTCTTTTAAATTGCAGATACATACAGTGAATATAATAAAACTGAGATTAGCACCTATTTGAATAGAATGGGTTTATATTTTTAAAATTGAGAGTAGAAGAGAAAAAGCCTTTAAAAGAAGAAATCATTAATGCCCACCTCCCAGGGTGACTATAGAAGTTACGAGAAAAACTTTGCAGCATGTAGTAAGAAAAGCTACTGGCAACATTTAATAAGGTATTCAGGAATAACTAGGGGGACTGGCTACTCCAGGATCTATAGCTTTGTCTCCATACCAAAATGCAGCAACATCTAGCAGATGTTTCAGAAATTTGCTCTTGATGACTCTTAGCACTAGCATTCAGAACAGCCAACTCACAGCAGCAGCCAGACCCAACAGAACAGGAGACTGGAAAAAGATAAATACTGGCTCTTTCCCATGGAAGAACACTGAGGATCCCAATGCAGTCAGTACCCTCAAAGAATCCCTGTACACATAGTGCAGAACAGCAACAGCAGGAGACTTTTCCCACTGGCTCGATGAGTCCTGTAAGCATAGTATCTACCTTAGACCTACTGTGTAGACTTTCATGTCTACCGTTGCTGAATTTCACTGTCAGCAACTCCATTGTCAATTCATTTCACTTTTGACTTATTCATGGACAGGACTTAAGAGCATCTCCTAATGTCCCCATTCCAAACTTCAGTTCTTACTACCAGAATATTCTACGATCAGGCTTCCCTCCTTTCACAGGACTTCAAGAAAGCCTTGGATTTCTTTCCTGCGCAGGGTAGAAAGGCCCAAATTGAGTGTTGAGGGTTCTCAGGTATCAACATGGAGAGCTGTAGGCAGCTCCCACTCCAACCATCACTGACAGAGAAACCAGTTACCACTTAGATTTTTGAATCCTATAATACCCAAATTGATGAATAAAAAGCTAAGTAAATAAGTCCCCAGTCTGAACAGATATTCAATTAGGGTTAGATTAATACATCCCAATTTGTATTCTCAATTTCATTTCATGAATTCCTCAATTAAAATGGCCCATTCCACGTACCTCTTTTAACAAAAAAAAGTATACCAATATATAAACATTTTCAGTCAGAAGTATGTGAAAATTAGTTCTCAATTCCCAGGGAACCATCTGATTGCAATTTGAATGGAACATTCAAGTCTCTTTCCCTGTGGGTAATATGCAAAACCACTTTTACTGTTTTAATAGCCAATTTAAGTTTCCATTGTGTTCAAAATATAAATTTGTAACTTACGTTTTTCTTCTCAGCATCTGACTCCAACATTTAATAGAGAAATAATAATTTATCTCAGGGACAAGTCTGGGTCCTTCCTGGACTCCCTGGGTTTTCACTGCATAATGGCCTCCTATACAAGCTTCCCGCCAACTCTCATGACCCCATTCCTCACCCGCTAGAGGAAGAGACTCCTCTTCCAAGCCATGTGAGTCCTCAGAGTGTTGAGGGCACCTGAATGCAGATAAAATCCTTTTCCATGATCCTCAACATATTACCAAAGACCCGCATTTATTTTTTTTAATGTTGTTCTAGTTCCTTATATCAGAAAACTGTACCATTAATTCTGAAAACTCCCAGATCTACCTATTTTTTCCACTCACAGTCTCTCCCCATGACATCCTAATCTCCAGCAACTTTTCCATGGAGTCTGTGTCCCTCAATGGGCTGACTGCTCTTTCTAGATTGAGCATCACCACAGTTAGGGTCTGAACTTCCTTTCTCTGTCTTCTGACATTCTGCCACATAAATACCATTCCTTTGTAAGTATCCTAAAAGGTCCTCAGTCCTTGTTATTATTAAGTTACCTGGACAGGATTCCAGCAGAGTATTGAACCCCAGCACTCCATTTTCTTAAATGGCTTATTGGCCACTTCTGGGTCTCAAATCTAGAATAGCCAGAAATTTTCAGCCTGATAATATTGATAAACAAGCTGTTTAACAATCATCTCCCAGCCCAGTGTAGCCAAGTTCTCCAAAGAAGATGAGGTAGGGTTCCTTTGATAACTCCAGATACCAAATGATTCAAATAACATATATTAGCATGCTTAGCTTAGCTGAATTTTGGGGAGGGGAAAGCTTCATGCTCACTTTCTTCCCCAGTAAGTCCTGGATATCTTTTAAGAGAAATAAATCCCTGCCAGGACAATGCTGCATCAGAAGGACGCTCTGTCTCAACTGCCCTTAACCTGCAGCTCAGGCCAGATATTTTGATTCTTTCCATCTCTTCCATGTGTCCTCTAAATCCTTGGAGAAAAAGTGCCCTCTTCTCCTTCCCCCTTTCTCTCACCAAATAGGAAGTTTAAAGCAAAAACCAAAAAATTAAAAAAGAAGAGGTCCTGACATACATATCCATCAGAAGGTAATGGTTCCTTCCTCCCACAGCACATTCCCTGTTAGCCAGGGGGTGTGAATTATCCTGTCAGTTACACAAAATTTCAACTTGTGGTGGAGTCTAAGAGTCTGGTTCTTGAAGATAATTGAATGCACGTCTTTGCAGTAAGAAATAGGGAAAAGTTGTTTGTGATCTGATTTGCAGGAAGAATTGGTATTTTCCTTTTCCAGGAATGTTTGGCTGACATTTGTAATGTTCAGGTAAAGCCTTCTTAAAGGGGAGGAAAAGGTGCTTTGCCTCCACCAATCAGGAACCTAGTCCATATCCAGCCTGGGCAAGGAAGTACCTCTAGCCATGTGGAAAAATCTATAGTAATATGACTTTTTCTACTTACTGCTTCTCAGTATTGGCTGGTTCATGAGCCATGTGCATATATGTAATAGAGTTGTGTGTAACATACAAAGGTAAACCACAGAGATTTATATCATATATATTTCATTTACTAATATAGATTTTAATAAGTCAGTTTCCAAAATAAGTATGAGTCTCTTTAAGCCATTACTGTATTTCCTGTTAAGCCTGATTTGTTTTTTATTTAATGGCTACAGAGTAAGTGAATCTTCCAGTATATGCATCTCTTGAATTTTCACAGGTTTAGTAAGATCCTGCTCCAGGATCAGATAGTCCAGACTGTAAGAGAAGGTCAGCTACATCACAGTTCAGACTGCTGTTTTTCTGCCAGTTATTTTTGAGGTGCAAGTATGAGTTCAGAGTTTAAGCTTGCTTGGGATTATGTCTTTTCTTCCTGTCATTCTATAGTTATTTCTCTCTGTAGCAGTGAAAAATTGGTGAGTCTGTGGCAGTTCTAAATCAACAATGGAAAATGAGACTCCCTCTTCCTACCCCAACTGCCTGCAAAATAAATGAGTACTGAGTGTCTCCAAGTGTGTTATCAGAGAGGAATCTATTATTTTGAAGAACGGGAGAGGTCTTTTCTATGTAGGAGAATGTGAAACAATGCACTGTTGCTGTTTAATAATTTGTATCTTCCCCTTTCAG
Seq C2 exon
GTTCCTTTCAGTGCTACCATGTCACCAGTTCGCTTGCATTCCTCCAACCCCAACCTTTGTGCAGATATTGAATTTCAGACTCCCCCTAGCCACCTCACTGACCCTCTGGAAAGTTCAACAGATTATACAAAGCTGCAAGAAGAATTTTGTCTAATCGCACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-OSBPL6:NM_145739:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0022314=PsaA_PsaB=PU(10.4=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)