GgaINT1031222 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:14952937-14953236:-
Coord C1 exon
chr7:14953174-14953236
Coord A exon
chr7:14953012-14953173
Coord C2 exon
chr7:14952937-14953011
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTCTTCCATTCACTGTCAGGAA
3' ss Score
8.02
Exon sequences
Seq C1 exon
TCCAACTCTTCTGGAGATAACATTAGCGAAGTACCTAGCTATATAAGTCTCTGGCATACACAG
Seq A exon
GTGAGAACATACAATATGTTCTCAAAATGTGTAGGATGTAAGAGCTAACAAAATTGAAATCCACTTAAAGACTCTCCCTCTCCCTTTTCTGATCACCTTTCATCTTCCCGTGTCCCATCACCCCTTCCCTTCTCTTTCTCTACTTCTTCCATTCACTGTCAG
Seq C2 exon
GAAGGGCCGGCACCGAAGGGCCAGTTCAGCACAACACGACGCCGGCAGAGACTAGCAGCTGCAGTGGCTACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACTCTTCTGGAGATAACATT
R:
TGTTGTAGCCACTGCAGCTG
Band lengths:
138-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]