GgaEX0013483 @ galGal4
Exon Skipping
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14949348-14953236:-
Coord C1 exon
chr7:14953174-14953236
Coord A exon
chr7:14952937-14953011
Coord C2 exon
chr7:14949348-14949513
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCATTCACTGTCAGGAA
3' ss Score
8.02
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCCAACTCTTCTGGAGATAACATTAGCGAAGTACCTAGCTATATAAGTCTCTGGCATACACAG
Seq A exon
GAAGGGCCGGCACCGAAGGGCCAGTTCAGCACAACACGACGCCGGCAGAGACTAGCAGCTGCAGTGGCTACAACA
Seq C2 exon
GTCCCTTTCAGTGCCACGATGTCTCCGGTTCGGCTGCATTCGTCCAATCCCAACCTTTGTGCAGATATCGAGTTCCAGACCCCCCCAAGCCATGTAACAGATCCTCTAGAGTGCTCTACAGAGTACATGAAGCTTCAAGAAGAATTTTGCTTGATGGCACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'12-20,'12-19,13-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.480 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACTCTTCTGGAGATAACATT
R:
GGATCTGTTACATGGCTTGGGG
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]