DreEX0053113 @ danRer10
Exon Skipping
Gene
ENSDARG00000021140 | pabpc1b
Description
poly A binding protein, cytoplasmic 1 b [Source:ZFIN;Acc:ZDB-GENE-050308-1]
Coordinates
chr19:12207919-12210581:-
Coord C1 exon
chr19:12210491-12210581
Coord A exon
chr19:12210273-12210383
Coord C2 exon
chr19:12207919-12208067
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACATTCAATATTGTCTACAGACT
3' ss Score
5.41
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCCCAGAACCGAGCTGCATACTACCCTACCAGTCAACTGGCCCAGCTCAGACCAAGCCCCCGCTGGACCACACAAGGCGTCCGGCCTCAAC
Seq A exon
ACTTCCAGAACATGCCAGGCACGATGCGCCCCTCTGCCCCCAGACCCCAGACCTTCAGCACCATGCGACCAGCATCCCAGGTGCCCCGCATGATGTCCACTCAGCGTGTGG
Seq C2 exon
CTACTCAGACCATGGGTCCTCGTCCTTCCACTGCAGCCGCTGCAGCTTCTGCTCCACCAGTGCGTGGCGTGCCTCAGTACAAATACGCCCCCAGTGTCCGCAACCCCCAGCAGCACATGAACACACAGCCTCAGGTTACCATGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021140-'19-20,'19-17,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=1.000 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGAGCTGCATACTACCCT
R:
CTGCTGCATGGTAACCTGAGG
Band lengths:
234-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]