GgaEX1041735 @ galGal4
Exon Skipping
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128377206-128378452:-
Coord C1 exon
chr2:128378359-128378452
Coord A exon
chr2:128378066-128378176
Coord C2 exon
chr2:128377206-128377360
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCATCTTTCCTAAAACACAGCAT
3' ss Score
3.18
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACTCAGAACCGTGCTGCATACTATCCTACTAATCAACTTGCTCAACTTGCTAGACCTAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATC
Seq A exon
CATTCCAAAACATGCCTGGTGCTATCCGCCCAGCAGCTCCCAGACCACCATTTAGCACCATGAGACCGGCTTCTTCACAAGTACCGCGAGTCATGTCAACACAACGTGTTG
Seq C2 exon
CTAATACATCAACACAAACAATGGGTCCACGTCCTGCAGCAGCAGCTACTGCAGCTACTCCTGCTGTACGCACAGTACCACAGTACAAATATGCTGCAGGTGTTCGTAATCCTCAGCAGCATCTTAATACACAGCCACAGGTTGCTATGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450-'15-18,'15-14,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=1.000 C2=0.885
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGAACCGTGCTGCATAC
R:
CATAGCAACCTGTGGCTGTGT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]