DreEX0053713 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14946104-14948892:-
Coord C1 exon
chr25:14948743-14948892
Coord A exon
chr25:14946384-14946455
Coord C2 exon
chr25:14946104-14946157
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTGCTTTGTCCTAGGGA
3' ss Score
9.17
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGAATTTAAATTTTCCACCCGAGATCAGTTGGAAACTATAAAAGACAAACTGTTTGAGGACGATTTTCTAGAACTCCAGAGTCTTCTCGTTATTGTAAACGAAGAACTTCAGCGAGGATACAAAGGCTGTTGGAACTATGCCTCAAAAAG
Seq A exon
GGATATTTTAATAGAGTGAAGCAGATGACAGTCTATAAATTGTTTTAAGCGGACAGTCAACTCTGTTTCCAG
Seq C2 exon
AATACTATAACCGGGCCACGTGGGAGTCTGGTGTCGCGTCCATGATGCAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0029213=PAX=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCGAGATCAGTTGGAA
R:
ATCATGGACGCGACACCAGA
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]