DreEX0053714 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14943183-14948892:-
Coord C1 exon
chr25:14948743-14948892
Coord A exon
chr25:14946104-14946157
Coord C2 exon
chr25:14943183-14943313
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTATGACTAATAGAAT
3' ss Score
4.69
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGAATTTAAATTTTCCACCCGAGATCAGTTGGAAACTATAAAAGACAAACTGTTTGAGGACGATTTTCTAGAACTCCAGAGTCTTCTCGTTATTGTAAACGAAGAACTTCAGCGAGGATACAAAGGCTGTTGGAACTATGCCTCAAAAAG
Seq A exon
AATACTATAACCGGGCCACGTGGGAGTCTGGTGTCGCGTCCATGATGCAAAACA
Seq C2 exon
GTCACAGTGGAGTGAACCAGCTCGGCGGTGTGTTCGTCAACGGCAGACCGCTACCCGACTCCACGAGACAGAAAATAGTTGAACTCGCACACAGTGGCGCGCGGCCGTGTGACATATCAAGAATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.944 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
PF0029213=PAX=PU(0.1=0.0)
C2:
PF0029213=PAX=PU(34.4=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGAGGATACAAAGGCTGT
R:
CCACTGTGTGCGAGTTCAACT
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]