DreEX0053715 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14943183-14946157:-
Coord C1 exon
chr25:14946104-14946157
Coord A exon
chr25:14945307-14945328
Coord C2 exon
chr25:14943183-14943313
Length
22 bp
Sequences
Splice sites
3' ss Seq
CTCTTAATGCTGGACAAGAGGTG
3' ss Score
-8.13
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AATACTATAACCGGGCCACGTGGGAGTCTGGTGTCGCGTCCATGATGCAAAACA
Seq A exon
GTGTATGACATCTGTAACGAAG
Seq C2 exon
GTCACAGTGGAGTGAACCAGCTCGGCGGTGTGTTCGTCAACGGCAGACCGCTACCCGACTCCACGAGACAGAAAATAGTTGAACTCGCACACAGTGGCGCGCGGCCGTGTGACATATCAAGAATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.944 A=0.667 C2=0.429
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(0.1=0.0)
A:
PF0029213=PAX=PU(0.1=0.0)
C2:
PF0029213=PAX=PU(34.4=97.7)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGTCCATGATGCAAAACA
R:
CCACTGTGTGCGAGTTCAACT
Band lengths:
118-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]