DreEX0053718 @ danRer10
Exon Skipping
Gene
ENSDARG00000045936 | pax6b
Description
paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
Coordinates
chr7:15619410-15627211:+
Coord C1 exon
chr7:15619410-15619556
Coord A exon
chr7:15623955-15624101
Coord C2 exon
chr7:15627158-15627211
Length
147 bp
Sequences
Splice sites
3' ss Seq
AATCTGTGTCTGCTTCGCAGGGA
3' ss Score
8.63
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACACCGTTTTTTTTTCATTCTCGCTGACATTTCCACACCGTACGGGATTCAAACGTGACACAATCTGGACTCATGAGATCGTTTTAATTAATTCCAGCGCAAGGGCTTGAAACAGCAGGATATTGATCAGAAGTCGGAAATATTCCG
Seq A exon
GGAATTTCCTTCCAGATAAGAGGTACGCTGGGAAAACGTATATATTTTTTGGACGAAGAAACTACCATTGGACAGTCATTGTTTATTTCCAAGTTTCACTGTTTTGCTCGGAAGGGCTCAGGCGGTGGAGCAGAATGCCTCAAAAAG
Seq C2 exon
AATACCATAACCAACCCACGTGGGAATCAGGAGTGGCGTCCATGATGCAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045936_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (disopred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0029213=PAX=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCTCGCTGACATTTCCACA
R:
GTTTTGCATCATGGACGCCAC
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]